IL_8GLP_329

3D structure

PDB id

8GLP (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.67 Å

Loop

Sequence

AC*GAA(PSU)

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8GLP_329 not in the Motif Atlas

Homologous match to IL_8P9A_412

Geometric discrepancy: 0.3416

The information below is about IL_8P9A_412

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68140.4

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

18

Unit IDs

8GLP|1|S2|A|802
8GLP|1|S2|C|803
*
8GLP|1|S2|G|860
8GLP|1|S2|A|861
8GLP|1|S2|A|862
8GLP|1|S2|PSU|863

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SH

40S ribosomal protein S7

Chain SL

40S ribosomal protein S11

Chain SW

40S ribosomal protein S15a

Chain SX

40S ribosomal protein S23 (uS12)