IL_8GLP_341

3D structure

PDB id

8GLP (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.67 Å

Loop

Sequence

ACAGGA(OMU)UG*CUCGAUU

Length

16 nucleotides

Bulged bases

8GLP|1|S2|G|1285, 8GLP|1|S2|U|1314

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8GLP|1|S2|A|1282
8GLP|1|S2|C|1283
8GLP|1|S2|A|1284
8GLP|1|S2|G|1285
8GLP|1|S2|G|1286
8GLP|1|S2|A|1287
8GLP|1|S2|OMU|1288
8GLP|1|S2|U|1289
8GLP|1|S2|G|1290
*
8GLP|1|S2|C|1309
8GLP|1|S2|U|1310
8GLP|1|S2|C|1311
8GLP|1|S2|G|1312
8GLP|1|S2|A|1313
8GLP|1|S2|U|1314
8GLP|1|S2|U|1315

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SK

40S ribosomal protein S10

Chain SM

40S ribosomal protein S12

Chain Sd

40S ribosomal protein S29

Chain Sf

Ubiquitin-40S ribosomal protein S27a