IL_8GXB_002

3D structure

PDB id

8GXB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of NAD+ -II riboswitch in complex with NAD+

Experimental method

X-RAY DIFFRACTION

Resolution

2.15 Å

Loop

Sequence

GUUACGUCCGAAAG*CAC

Length

17 nucleotides

Bulged bases

8GXB|1|A|A|9, 8GXB|1|A|A|16

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_96303.1

Basepair signature

cWW-cSH-tSW-tHW-cWW-L-L-R-L-R

Number of instances in this motif group

3

Unit IDs

8GXB|1|A|G|6
8GXB|1|A|U|7
8GXB|1|A|U|8
8GXB|1|A|A|9
8GXB|1|A|C|10
8GXB|1|A|G|11
8GXB|1|A|U|12
8GXB|1|A|C|13
8GXB|1|A|C|14
8GXB|1|A|G|15
8GXB|1|A|A|16
8GXB|1|A|A|17
8GXB|1|A|A|18
8GXB|1|A|G|19
*
8GXB|1|A|C|38
8GXB|1|A|A|39
8GXB|1|A|C|40

Current chains

Chain A

NAD+ II riboswitch

Nearby chains

Chain B

NAD+ II riboswitch

Chain C

U1 small nuclear ribonucleoprotein A

Chain F

U1 small nuclear ribonucleoprotein A