3D structure

PDB id
8GXB (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of NAD+ -II riboswitch in complex with NAD+
Experimental method
X-RAY DIFFRACTION
Resolution
2.15 Å

Loop

Sequence
GUUACGUCCGAAAG*CAC
Length
17 nucleotides
Bulged bases
8GXB|1|A|A|9, 8GXB|1|A|A|16
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_96303.1
Basepair signature
cWW-cSH-tSW-tHW-cWW-L-L-R-L-R
Number of instances in this motif group
3

Unit IDs

8GXB|1|A|G|6
8GXB|1|A|U|7
8GXB|1|A|U|8
8GXB|1|A|A|9
8GXB|1|A|C|10
8GXB|1|A|G|11
8GXB|1|A|U|12
8GXB|1|A|C|13
8GXB|1|A|C|14
8GXB|1|A|G|15
8GXB|1|A|A|16
8GXB|1|A|A|17
8GXB|1|A|A|18
8GXB|1|A|G|19
*
8GXB|1|A|C|38
8GXB|1|A|A|39
8GXB|1|A|C|40

Current chains

Chain A
NAD+ II riboswitch

Nearby chains

Chain B
NAD+ II riboswitch
Chain C
U1 small nuclear ribonucleoprotein A
Chain F
U1 small nuclear ribonucleoprotein A

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.0889 s