Motif IL_96303.1 Version IL_96303.1 of this group appears in releases 3.77 to 3.89
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | break | 11 | 12 | 13 | 1-2 | 1-13 | 3-7 | 7-12 | 10-11 | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_8I3Z_002 | 8I3Z | 0.2074 | 4 | A+B | RNA (24-mer) + RNA (31-MER) | G | 6 | U | 7 | U | 8 | U | 12 | C | 13 | C | 14 | G | 15 | A | 17 | A | 18 | G | 19 | * | C | 30 | A | 31 | C | 32 | cSH | cWW | tSW | cWW | |
2 | IL_8HBA_004 | 8HBA | 0.0000 | 4 | B | RNA (55-MER) | G | 6 | U | 7 | U | 8 | U | 12 | C | 13 | C | 14 | G | 15 | A | 17 | A | 18 | G | 19 | * | C | 30 | A | 31 | C | 32 | cSH | cWW | tHW | tSW | |
3 | IL_8GXB_002 | 8GXB | 0.5602 | 4 | A | NAD+ II riboswitch | G | 6 | U | 7 | U | 8 | U | 12 | C | 13 | C | 14 | G | 15 | A | 17 | A | 18 | G | 19 | * | C | 38 | A | 39 | C | 40 | cSH | cWW | tHW | tSW | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
GUUGCGUCCGAAAG*CAC | 2 |
GUUACGUCCGAAAG*CAC | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
UUGCGUCCGAAA*A | 2 |
UUACGUCCGAAA*A | 1 |
Release history
Release | 3.77 | 3.78 | 3.79 | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 | 3.88 | 3.89 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Date | 2023-12-06 | 2024-01-03 | 2024-01-03 | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 | 2024-08-14 | 2024-09-11 | 2024-10-09 |
Status | New id, no parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-cSH-tSW-tHW-cWW-L-L-R-L-R
- Heat map statistics
- Min 0.21 | Avg 0.31 | Max 0.64
Coloring options: