IL_8HB3_002

3D structure

PDB id

8HB3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of NAD-II riboswitch (two strands) with NR

Experimental method

X-RAY DIFFRACTION

Resolution

2.87 Å

Loop

Sequence

GUUGCGUCCGAAAG*CAC

Length

17 nucleotides

Bulged bases

8HB3|1|A|G|9, 8HB3|1|A|C|10, 8HB3|1|A|G|11, 8HB3|1|A|A|16

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HB3_002 not in the Motif Atlas

Geometric match to IL_8I3Z_002

Geometric discrepancy: 0.0828

The information below is about IL_8I3Z_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_96303.1

Basepair signature

cWW-cSH-tSW-tHW-cWW-L-L-R-L-R

Number of instances in this motif group

3

Unit IDs

8HB3|1|A|G|6
8HB3|1|A|U|7
8HB3|1|A|U|8
8HB3|1|A|G|9
8HB3|1|A|C|10
8HB3|1|A|G|11
8HB3|1|A|U|12
8HB3|1|A|C|13
8HB3|1|A|C|14
8HB3|1|A|G|15
8HB3|1|A|A|16
8HB3|1|A|A|17
8HB3|1|A|A|18
8HB3|1|A|G|19
*
8HB3|1|B|C|30
8HB3|1|B|A|31
8HB3|1|B|C|32

Current chains

Chain A

RNA (5'-R(*AP*GP*AP*GP*CP*GP*UP*UP*GP*CP*GP*UP*CP*CP*GP*AP*AP*AP*GP*UP*(CBV)P*GP*CP*C)-3')

Chain B

RNA (31-MER)

Nearby chains