IL_8HFR_014
3D structure
- PDB id
- 8HFR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NPC-trapped pre-60S particle
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.64 Å
Loop
- Sequence
- GAAC*GAGUGAAAAAGUAC
- Length
- 18 nucleotides
- Bulged bases
- 8HFR|1|1e|A|398, 8HFR|1|1e|A|402
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8HFR_014 not in the Motif Atlas
- Homologous match to IL_8C3A_015
- Geometric discrepancy: 0.0962
- The information below is about IL_8C3A_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_60992.7
- Basepair signature
- cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L
- Number of instances in this motif group
- 6
Unit IDs
8HFR|1|1e|G|376
8HFR|1|1e|A|377
8HFR|1|1e|A|378
8HFR|1|1e|C|379
*
8HFR|1|1e|G|390
8HFR|1|1e|A|391
8HFR|1|1e|G|392
8HFR|1|1e|U|393
8HFR|1|1e|G|394
8HFR|1|1e|A|395
8HFR|1|1e|A|396
8HFR|1|1e|A|397
8HFR|1|1e|A|398
8HFR|1|1e|A|399
8HFR|1|1e|G|400
8HFR|1|1e|U|401
8HFR|1|1e|A|402
8HFR|1|1e|C|403
Current chains
- Chain 1e
- 25S ribosomal RNA
Nearby chains
- Chain 3n
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain Pv
- 60S ribosomal protein L17-A
- Chain YU
- 60S ribosomal protein L26-A
- Chain li
- 60S ribosomal protein L39
- Chain pT
- Probable metalloprotease ARX1
- Chain qJ
- Ribosome biogenesis protein ALB1
- Chain rA
- Nucleolar GTP-binding protein 1
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