IL_8HFR_019
3D structure
- PDB id
- 8HFR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NPC-trapped pre-60S particle
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.64 Å
Loop
- Sequence
- GGAUAAAUC*GGAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 8HFR|1|1e|A|519, 8HFR|1|1e|U|520
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8HFR_019 not in the Motif Atlas
- Homologous match to IL_5TBW_019
- Geometric discrepancy: 0.0921
- The information below is about IL_5TBW_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_74024.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
8HFR|1|1e|G|517
8HFR|1|1e|G|518
8HFR|1|1e|A|519
8HFR|1|1e|U|520
8HFR|1|1e|A|521
8HFR|1|1e|A|522
8HFR|1|1e|A|523
8HFR|1|1e|U|524
8HFR|1|1e|C|525
*
8HFR|1|1e|G|567
8HFR|1|1e|G|568
8HFR|1|1e|A|569
8HFR|1|1e|A|570
8HFR|1|1e|U|571
8HFR|1|1e|A|572
8HFR|1|1e|C|573
Current chains
- Chain 1e
- 25S ribosomal RNA
Nearby chains
- Chain DO
- 60S ribosomal protein L4-A
- Chain Gu
- 60S ribosomal protein L7-A
- Chain MQ
- 60S ribosomal protein L14-A
- Chain SZ
- 60S ribosomal protein L20-A
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