IL_8HFR_024

3D structure

PDB id

8HFR (explore in PDB, NAKB, or RNA 3D Hub)

Description

NPC-trapped pre-60S particle

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

8HFR|1|1e|A|780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HFR_024 not in the Motif Atlas

Homologous match to IL_5TBW_024

Geometric discrepancy: 0.0859

The information below is about IL_5TBW_024

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

8HFR|1|1e|C|752
8HFR|1|1e|C|753
*
8HFR|1|1e|G|779
8HFR|1|1e|A|780
8HFR|1|1e|G|781

Current chains

Chain 1e

25S ribosomal RNA

Nearby chains

Chain Qk

60S ribosomal protein L18-A

Chain aw

60S ribosomal protein L28