IL_8HFR_026

3D structure

PDB id

8HFR (explore in PDB, NAKB, or RNA 3D Hub)

Description

NPC-trapped pre-60S particle

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

CUGAUG*CGGAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HFR_026 not in the Motif Atlas

Geometric match to IL_5TBW_026

Geometric discrepancy: 0.2569

The information below is about IL_5TBW_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8HFR|1|1e|C|758
8HFR|1|1e|U|759
8HFR|1|1e|G|760
8HFR|1|1e|A|761
8HFR|1|1e|U|762
8HFR|1|1e|G|763
*
8HFR|1|1e|C|768
8HFR|1|1e|G|769
8HFR|1|1e|G|770
8HFR|1|1e|A|771
8HFR|1|1e|U|772
8HFR|1|1e|G|773

Current chains

Chain 1e

25S ribosomal RNA

Nearby chains

Chain LL

60S ribosomal protein L13-A

Chain aw

60S ribosomal protein L28

Chain mS

60S ribosomal protein L42-A