IL_8HFR_032

3D structure

PDB id

8HFR (explore in PDB, NAKB, or RNA 3D Hub)

Description

NPC-trapped pre-60S particle

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

CUG*CG

Length

5 nucleotides

Bulged bases

8HFR|1|1e|U|874

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HFR_032 not in the Motif Atlas

Geometric match to IL_3D2V_001

Geometric discrepancy: 0.2602

The information below is about IL_3D2V_001

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

149

Unit IDs

8HFR|1|1e|C|873
8HFR|1|1e|U|874
8HFR|1|1e|G|875
*
8HFR|1|1e|C|886
8HFR|1|1e|G|887

Current chains

Chain 1e

25S ribosomal RNA

Nearby chains

Chain CD

60S ribosomal protein L3

Chain jh

60S ribosomal protein L37-A

Chain rA

Nucleolar GTP-binding protein 1