IL_8HFR_039
3D structure
- PDB id
- 8HFR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NPC-trapped pre-60S particle
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.64 Å
Loop
- Sequence
- AAG*CUUU
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8HFR_039 not in the Motif Atlas
- Geometric match to IL_4V9F_053
- Geometric discrepancy: 0.3938
- The information below is about IL_4V9F_053
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_49140.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 4
Unit IDs
8HFR|1|1e|A|997
8HFR|1|1e|A|998
8HFR|1|1e|G|999
*
8HFR|1|1e|C|1049
8HFR|1|1e|U|1050
8HFR|1|1e|U|1051
8HFR|1|1e|U|1052
Current chains
- Chain 1e
- 25S ribosomal RNA
Nearby chains
- Chain 2f
- 5S ribosomal RNA; 5S rRNA
- Chain Ez
- 60S ribosomal protein L5
- Chain Tl
- 60S ribosomal protein L21-A
- Chain sm
- Translation machinery-associated protein 16
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