IL_8HFR_043

3D structure

PDB id

8HFR (explore in PDB, NAKB, or RNA 3D Hub)

Description

NPC-trapped pre-60S particle

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

AUU*ACU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HFR_043 not in the Motif Atlas

Homologous match to IL_8C3A_049

Geometric discrepancy: 0.0944

The information below is about IL_8C3A_049

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

8HFR|1|1e|A|1120
8HFR|1|1e|U|1121
8HFR|1|1e|U|1122
*
8HFR|1|1e|A|1136
8HFR|1|1e|C|1137
8HFR|1|1e|U|1138

Current chains

Chain 1e

25S ribosomal RNA

Nearby chains

Chain 2f

5S ribosomal RNA; 5S rRNA

Chain Gu

60S ribosomal protein L7-A

Chain b3

60S ribosomal protein L29