IL_8HFR_049

3D structure

PDB id

8HFR (explore in PDB, NAKB, or RNA 3D Hub)

Description

NPC-trapped pre-60S particle

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

8HFR|1|1e|U|1208

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HFR_049 not in the Motif Atlas

Homologous match to IL_5TBW_053

Geometric discrepancy: 0.2567

The information below is about IL_5TBW_053

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

8HFR|1|1e|G|1207
8HFR|1|1e|U|1208
8HFR|1|1e|G|1209
*
8HFR|1|1e|C|1296
8HFR|1|1e|C|1297

Current chains

Chain 1e

25S ribosomal RNA

Nearby chains

Chain 2f

5S ribosomal RNA; 5S rRNA

Chain Ib

60S ribosomal protein L9-A

Chain SZ

60S ribosomal protein L20-A

Chain Wg

Ribosome assembly factor MRT4

Chain xd

Ribosome biogenesis protein NSA2