IL_8HFR_052

3D structure

PDB id

8HFR (explore in PDB, NAKB, or RNA 3D Hub)

Description

NPC-trapped pre-60S particle

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

8HFR|1|1e|A|1263

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HFR_052 not in the Motif Atlas

Geometric match to IL_5D8H_003

Geometric discrepancy: 0.1524

The information below is about IL_5D8H_003

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_36931.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

24

Unit IDs

8HFR|1|1e|G|1262
8HFR|1|1e|A|1263
8HFR|1|1e|G|1264
8HFR|1|1e|U|1265
8HFR|1|1e|G|1266
*
8HFR|1|1e|C|1275
8HFR|1|1e|U|1276
8HFR|1|1e|C|1277

Current chains

Chain 1e

25S ribosomal RNA

Nearby chains

Chain KM

YEAST 60S ribosomal protein L12-A

Chain Wg

Ribosome assembly factor MRT4

Chain xd

Ribosome biogenesis protein NSA2