IL_8HFR_060

3D structure

PDB id

8HFR (explore in PDB, NAKB, or RNA 3D Hub)

Description

NPC-trapped pre-60S particle

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

GGC*GC

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HFR_060 not in the Motif Atlas

Geometric match to IL_4WF9_007

Geometric discrepancy: 0.2749

The information below is about IL_4WF9_007

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

48

Unit IDs

8HFR|1|1e|G|1560
8HFR|1|1e|G|1561
8HFR|1|1e|C|1562
*
8HFR|1|1e|G|1577
8HFR|1|1e|C|1578

Current chains

Chain 1e

25S ribosomal RNA

Nearby chains

Chain 3n

5.8S ribosomal RNA; 5.8S rRNA

Chain B4

60S ribosomal protein L2-A

Chain Hj

60S ribosomal protein L8-A

Chain Xc

60S ribosomal protein L25