IL_8HFR_078

3D structure

PDB id

8HFR (explore in PDB, NAKB, or RNA 3D Hub)

Description

NPC-trapped pre-60S particle

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

GC*GCC

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HFR_078 not in the Motif Atlas

Geometric match to IL_5TBW_035

Geometric discrepancy: 0.2533

The information below is about IL_5TBW_035

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_05035.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

38

Unit IDs

8HFR|1|1e|G|1983
8HFR|1|1e|C|1984
*
8HFR|1|1e|G|2037
8HFR|1|1e|C|2038
8HFR|1|1e|C|2039

Current chains

Chain 1e

25S ribosomal RNA

Nearby chains