IL_8HFR_085

3D structure

PDB id

8HFR (explore in PDB, NAKB, or RNA 3D Hub)

Description

NPC-trapped pre-60S particle

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

CUG*CG

Length

5 nucleotides

Bulged bases

8HFR|1|1e|U|2205

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HFR_085 not in the Motif Atlas

Geometric match to IL_2ZY6_002

Geometric discrepancy: 0.2914

The information below is about IL_2ZY6_002

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

149

Unit IDs

8HFR|1|1e|C|2204
8HFR|1|1e|U|2205
8HFR|1|1e|G|2206
*
8HFR|1|1e|C|2237
8HFR|1|1e|G|2238

Current chains

Chain 1e

25S ribosomal RNA

Nearby chains

Chain B4

60S ribosomal protein L2-A

Chain vV

60S ribosomal export protein NMD3

Chain xI

Shuttling pre-60S factor ECM1