IL_8HFR_089

3D structure

PDB id

8HFR (explore in PDB, NAKB, or RNA 3D Hub)

Description

NPC-trapped pre-60S particle

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

GA*UACC

Length

6 nucleotides

Bulged bases

8HFR|1|1e|C|2983

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HFR_089 not in the Motif Atlas

Geometric match to IL_4WF9_078

Geometric discrepancy: 0.3149

The information below is about IL_4WF9_078

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.8

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

43

Unit IDs

8HFR|1|1e|G|2396
8HFR|1|1e|A|2397
*
8HFR|1|1e|U|2981
8HFR|1|1e|A|2982
8HFR|1|1e|C|2983
8HFR|1|1e|C|2984

Current chains

Chain 1e

25S ribosomal RNA

Nearby chains

Chain CD

60S ribosomal protein L3

Chain Pv

60S ribosomal protein L17-A