IL_8HFR_090

3D structure

PDB id

8HFR (explore in PDB, NAKB, or RNA 3D Hub)

Description

NPC-trapped pre-60S particle

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

GUU*AC

Length

5 nucleotides

Bulged bases

8HFR|1|1e|U|2410

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HFR_090 not in the Motif Atlas

Homologous match to IL_8C3A_098

Geometric discrepancy: 0.103

The information below is about IL_8C3A_098

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

8HFR|1|1e|G|2409
8HFR|1|1e|U|2410
8HFR|1|1e|U|2411
*
8HFR|1|1e|A|2811
8HFR|1|1e|C|2812

Current chains

Chain 1e

25S ribosomal RNA

Nearby chains

Chain DO

60S ribosomal protein L4-A

Chain aw

60S ribosomal protein L28

Chain rA

Nucleolar GTP-binding protein 1