IL_8HFR_091

3D structure

PDB id

8HFR (explore in PDB, NAKB, or RNA 3D Hub)

Description

NPC-trapped pre-60S particle

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

GA*UACC

Length

6 nucleotides

Bulged bases

8HFR|1|1e|A|2808

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HFR_091 not in the Motif Atlas

Homologous match to IL_5TBW_094

Geometric discrepancy: 0.0541

The information below is about IL_5TBW_094

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

8HFR|1|1e|G|2412
8HFR|1|1e|A|2413
*
8HFR|1|1e|U|2807
8HFR|1|1e|A|2808
8HFR|1|1e|C|2809
8HFR|1|1e|C|2810

Current chains

Chain 1e

25S ribosomal RNA

Nearby chains

Chain B4

60S ribosomal protein L2-A

Chain rA

Nucleolar GTP-binding protein 1