IL_8HFR_096

3D structure

PDB id

8HFR (explore in PDB, NAKB, or RNA 3D Hub)

Description

NPC-trapped pre-60S particle

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

GGUGUAGAAUAG*CUAC*C

Length

17 nucleotides

Bulged bases

8HFR|1|1e|A|2458

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8HFR|1|1e|G|2451
8HFR|1|1e|G|2452
8HFR|1|1e|U|2453
8HFR|1|1e|G|2454
8HFR|1|1e|U|2455
8HFR|1|1e|A|2456
8HFR|1|1e|G|2457
8HFR|1|1e|A|2458
8HFR|1|1e|A|2459
8HFR|1|1e|U|2460
8HFR|1|1e|A|2461
8HFR|1|1e|G|2463
*
8HFR|1|1e|C|2492
8HFR|1|1e|U|2493
8HFR|1|1e|A|2494
8HFR|1|1e|C|2495
*
8HFR|1|1e|C|2495

Current chains

Chain 1e

25S ribosomal RNA

Nearby chains

Chain As

YEAST 60S ribosomal protein L1-A

Chain CW

mRNA export factor MEX67