IL_8HFR_102
3D structure
- PDB id
- 8HFR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NPC-trapped pre-60S particle
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.64 Å
Loop
- Sequence
- UCAAG*CGACA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8HFR_102 not in the Motif Atlas
- Homologous match to IL_8C3A_114
- Geometric discrepancy: 0.2768
- The information below is about IL_8C3A_114
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_65585.1
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 13
Unit IDs
8HFR|1|1e|U|2835
8HFR|1|1e|C|2836
8HFR|1|1e|A|2837
8HFR|1|1e|A|2838
8HFR|1|1e|G|2839
*
8HFR|1|1e|C|2849
8HFR|1|1e|G|2850
8HFR|1|1e|A|2851
8HFR|1|1e|C|2852
8HFR|1|1e|A|2853
Current chains
- Chain 1e
- 25S ribosomal RNA
Nearby chains
- Chain rA
- Nucleolar GTP-binding protein 1
- Chain sm
- Translation machinery-associated protein 16
- Chain xd
- Ribosome biogenesis protein NSA2
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