IL_8HFR_104

3D structure

PDB id

8HFR (explore in PDB, NAKB, or RNA 3D Hub)

Description

NPC-trapped pre-60S particle

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

CU*AACG

Length

6 nucleotides

Bulged bases

8HFR|1|1e|A|2941, 8HFR|1|1e|C|2942

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HFR_104 not in the Motif Atlas

Geometric match to IL_4V9F_088

Geometric discrepancy: 0.0907

The information below is about IL_4V9F_088

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_44609.2

Basepair signature

cWW-cWW

Number of instances in this motif group

24

Unit IDs

8HFR|1|1e|C|2881
8HFR|1|1e|U|2882
*
8HFR|1|1e|A|2940
8HFR|1|1e|A|2941
8HFR|1|1e|C|2942
8HFR|1|1e|G|2943

Current chains

Chain 1e

25S ribosomal RNA

Nearby chains

Chain CD

60S ribosomal protein L3

Chain V5

60S ribosomal protein L23-A

Chain rA

Nucleolar GTP-binding protein 1