IL_8HFR_133

3D structure

PDB id

8HFR (explore in PDB, NAKB, or RNA 3D Hub)

Description

NPC-trapped pre-60S particle

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

UUCCC*GAUCA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HFR_133 not in the Motif Atlas

Geometric match to IL_5TBW_376

Geometric discrepancy: 0.0943

The information below is about IL_5TBW_376

Detailed Annotation

Symmetric double minor groove platform

Broad Annotation

No text annotation

Motif group

IL_58103.9

Basepair signature

cWW-cSH-cWS-tSW-L-R-cWW-R

Number of instances in this motif group

9

Unit IDs

8HFR|1|2f|U|32
8HFR|1|2f|U|33
8HFR|1|2f|C|34
8HFR|1|2f|C|35
8HFR|1|2f|C|36
*
8HFR|1|2f|G|41
8HFR|1|2f|A|42
8HFR|1|2f|U|43
8HFR|1|2f|C|44
8HFR|1|2f|A|45

Current chains

Chain 2f

5S ribosomal RNA

Nearby chains

Chain 1e

Large subunit ribosomal RNA; LSU rRNA

Chain Ez

60S ribosomal protein L5

Chain Jy

60S ribosomal protein L11-A