IL_8HFR_140

3D structure

PDB id

8HFR (explore in PDB, NAKB, or RNA 3D Hub)

Description

NPC-trapped pre-60S particle

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

AAGCGAAU*AAACUUU

Length

15 nucleotides

Bulged bases

8HFR|1|1e|G|1001, 8HFR|1|1e|A|1047, 8HFR|1|1e|A|1048

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8HFR|1|1e|A|997
8HFR|1|1e|A|998
8HFR|1|1e|G|999
8HFR|1|1e|C|1000
8HFR|1|1e|G|1001
8HFR|1|1e|A|1002
8HFR|1|1e|A|1003
8HFR|1|1e|U|1004
*
8HFR|1|1e|A|1046
8HFR|1|1e|A|1047
8HFR|1|1e|A|1048
8HFR|1|1e|C|1049
8HFR|1|1e|U|1050
8HFR|1|1e|U|1051
8HFR|1|1e|U|1052

Current chains

Chain 1e

25S ribosomal RNA

Nearby chains

Chain 2f

5S ribosomal RNA; 5S rRNA

Chain Ez

60S ribosomal protein L5

Chain Tl

60S ribosomal protein L21-A

Chain sm

Translation machinery-associated protein 16