IL_8HFR_142

3D structure

PDB id

8HFR (explore in PDB, NAKB, or RNA 3D Hub)

Description

NPC-trapped pre-60S particle

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

GG*UUUC

Length

6 nucleotides

Bulged bases

8HFR|1|1e|U|1820, 8HFR|1|1e|U|1821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HFR_142 not in the Motif Atlas

Homologous match to IL_8C3A_483

Geometric discrepancy: 0.2252

The information below is about IL_8C3A_483

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25360.1

Basepair signature

cWW-cWW

Number of instances in this motif group

10

Unit IDs

8HFR|1|1e|G|1623
8HFR|1|1e|G|1624
*
8HFR|1|1e|U|1819
8HFR|1|1e|U|1820
8HFR|1|1e|U|1821
8HFR|1|1e|C|1822

Current chains

Chain 1e

25S ribosomal RNA

Nearby chains

Chain g2

60S ribosomal protein L34-A