IL_8HFR_144

3D structure

PDB id

8HFR (explore in PDB, NAKB, or RNA 3D Hub)

Description

NPC-trapped pre-60S particle

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

UGCUUGUGGACUG*CGGACUACUUGCG

Length

26 nucleotides

Bulged bases

8HFR|1|1e|U|1989, 8HFR|1|1e|C|2030, 8HFR|1|1e|U|2031

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8HFR|1|1e|U|1986
8HFR|1|1e|G|1987
8HFR|1|1e|C|1988
8HFR|1|1e|U|1989
8HFR|1|1e|U|1990
8HFR|1|1e|G|1991
8HFR|1|1e|U|1992
8HFR|1|1e|G|1993
8HFR|1|1e|G|1994
8HFR|1|1e|A|1995
8HFR|1|1e|C|1996
8HFR|1|1e|U|1997
8HFR|1|1e|G|1998
*
8HFR|1|1e|C|2023
8HFR|1|1e|G|2024
8HFR|1|1e|G|2025
8HFR|1|1e|A|2026
8HFR|1|1e|C|2027
8HFR|1|1e|U|2028
8HFR|1|1e|A|2029
8HFR|1|1e|C|2030
8HFR|1|1e|U|2031
8HFR|1|1e|U|2032
8HFR|1|1e|G|2033
8HFR|1|1e|C|2034
8HFR|1|1e|G|2035

Current chains

Chain 1e

25S ribosomal RNA

Nearby chains

Chain Bt

mRNA transport regulator MTR2

Chain pT

Probable metalloprotease ARX1