IL_8HL2_029

3D structure

PDB id

8HL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GAGUAG*CUUAGAUAC

Length

15 nucleotides

Bulged bases

8HL2|1|A16S|A|668

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8HL2|1|A16S|G|649
8HL2|1|A16S|A|650
8HL2|1|A16S|G|651
8HL2|1|A16S|U|652
8HL2|1|A16S|A|653
8HL2|1|A16S|G|654
*
8HL2|1|A16S|C|665
8HL2|1|A16S|U|666
8HL2|1|A16S|U|667
8HL2|1|A16S|A|668
8HL2|1|A16S|G|669
8HL2|1|A16S|A|670
8HL2|1|A16S|U|671
8HL2|1|A16S|A|672
8HL2|1|A16S|C|673

Current chains

Chain A16S

16s rRNA (1493-MER)

Nearby chains

Chain A23S

Large subunit ribosomal RNA; LSU rRNA

Chain S11P

30S ribosomal protein S11

Chain S3AE

30S ribosomal protein S3Ae