IL_8HL2_071

3D structure

PDB id

8HL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CGAACG*UUAGUAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HL2_071 not in the Motif Atlas

Geometric match to IL_7RQB_007

Geometric discrepancy: 0.1593

The information below is about IL_7RQB_007

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_76042.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

8HL2|1|A23S|C|167
8HL2|1|A23S|G|168
8HL2|1|A23S|A|169
8HL2|1|A23S|A|170
8HL2|1|A23S|C|171
8HL2|1|A23S|G|172
*
8HL2|1|A23S|U|181
8HL2|1|A23S|U|182
8HL2|1|A23S|A|183
8HL2|1|A23S|G|184
8HL2|1|A23S|U|185
8HL2|1|A23S|A|186
8HL2|1|A23S|G|187

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain L15E

50S ribosomal protein L15e

Chain L37E

50S ribosomal protein L37e