IL_8HL2_078

3D structure

PDB id

8HL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GAAC*GAGUGCAAAGAGC

Length

17 nucleotides

Bulged bases

8HL2|1|A23S|A|548, 8HL2|1|A23S|G|551

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8HL2|1|A23S|G|525
8HL2|1|A23S|A|526
8HL2|1|A23S|A|527
8HL2|1|A23S|C|528
*
8HL2|1|A23S|G|540
8HL2|1|A23S|A|541
8HL2|1|A23S|G|542
8HL2|1|A23S|U|543
8HL2|1|A23S|G|544
8HL2|1|A23S|C|545
8HL2|1|A23S|A|546
8HL2|1|A23S|A|547
8HL2|1|A23S|A|548
8HL2|1|A23S|G|549
8HL2|1|A23S|A|550
8HL2|1|A23S|G|551
8HL2|1|A23S|C|552

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain L22P

50S ribosomal protein L22

Chain L24P

50S ribosomal protein L24

Chain L39E

50S ribosomal protein L39e

Chain L46A

Conserved protein