IL_8HL2_088

3D structure

PDB id

8HL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GC*GAC

Length

5 nucleotides

Bulged bases

8HL2|1|A23S|A|900

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HL2_088 not in the Motif Atlas

Geometric match to IL_7A0S_016

Geometric discrepancy: 0.1613

The information below is about IL_7A0S_016

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

175

Unit IDs

8HL2|1|A23S|G|830
8HL2|1|A23S|C|831
*
8HL2|1|A23S|G|899
8HL2|1|A23S|A|900
8HL2|1|A23S|C|901

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain AL2P

50S ribosomal protein L2

Chain L34E

50S ribosomal protein L34e

Chain L37A

50S ribosomal protein L37Ae