IL_8HL2_089

3D structure

PDB id

8HL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CU*GGG

Length

5 nucleotides

Bulged bases

8HL2|1|A23S|G|862

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HL2_089 not in the Motif Atlas

Geometric match to IL_7A0S_017

Geometric discrepancy: 0.1586

The information below is about IL_7A0S_017

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

76

Unit IDs

8HL2|1|A23S|C|835
8HL2|1|A23S|U|836
*
8HL2|1|A23S|G|861
8HL2|1|A23S|G|862
8HL2|1|A23S|G|863

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain AL2P

50S ribosomal protein L2

Chain L19E

50S ribosomal protein L19e

Chain L37A

50S ribosomal protein L37Ae