IL_8HL2_090

3D structure

PDB id

8HL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HL2_090 not in the Motif Atlas

Homologous match to IL_4V9F_027

Geometric discrepancy: 0.1745

The information below is about IL_4V9F_027

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_15190.3

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

26

Unit IDs

8HL2|1|A23S|U|836
8HL2|1|A23S|G|837
8HL2|1|A23S|A|838
8HL2|1|A23S|A|839
8HL2|1|A23S|G|840
*
8HL2|1|A23S|U|857
8HL2|1|A23S|G|858
8HL2|1|A23S|G|859
8HL2|1|A23S|A|860
8HL2|1|A23S|G|861

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain AL2P

50S ribosomal protein L2

Chain L19E

50S ribosomal protein L19e

Chain L37A

50S ribosomal protein L37Ae