IL_8HL2_099

3D structure

PDB id

8HL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GA*UCC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HL2_099 not in the Motif Atlas

Geometric match to IL_4V9F_034

Geometric discrepancy: 0.1401

The information below is about IL_4V9F_034

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.4

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

68

Unit IDs

8HL2|1|A23S|G|999
8HL2|1|A23S|A|1000
*
8HL2|1|A23S|U|1049
8HL2|1|A23S|C|1050
8HL2|1|A23S|C|1051

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain A5S

5S ribosomal RNA; 5S rRNA

Chain L10E

50S ribosomal protein L10e

Chain L18P

50S ribosomal protein L18

Chain L21E

50S ribosomal protein L21e