IL_8HL2_101

3D structure

PDB id

8HL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

AUC*GGU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HL2_101 not in the Motif Atlas

Geometric match to IL_5TBW_047

Geometric discrepancy: 0.1916

The information below is about IL_5TBW_047

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_52767.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

8HL2|1|A23S|A|1008
8HL2|1|A23S|U|1009
8HL2|1|A23S|C|1010
*
8HL2|1|A23S|G|1041
8HL2|1|A23S|G|1042
8HL2|1|A23S|U|1043

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain APTN

Transfer RNA; tRNA

Chain L10E

50S ribosomal protein L10e