IL_8HL2_103

3D structure

PDB id

8HL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

UUAAG*CGAGA

Length

10 nucleotides

Bulged bases

8HL2|1|A23S|G|1297

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HL2_103 not in the Motif Atlas

Homologous match to IL_4V9F_037

Geometric discrepancy: 0.1595

The information below is about IL_4V9F_037

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_08938.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

25

Unit IDs

8HL2|1|A23S|U|1134
8HL2|1|A23S|U|1135
8HL2|1|A23S|A|1136
8HL2|1|A23S|A|1137
8HL2|1|A23S|G|1138
*
8HL2|1|A23S|C|1294
8HL2|1|A23S|G|1295
8HL2|1|A23S|A|1296
8HL2|1|A23S|G|1297
8HL2|1|A23S|A|1298

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain A5S

5S ribosomal RNA; 5S rRNA

Chain L30P

50S ribosomal protein L30

Chain L32E

50S ribosomal protein L32e