IL_8HL2_114

3D structure

PDB id

8HL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

UGG*CG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HL2_114 not in the Motif Atlas

Geometric match to IL_8VTW_080

Geometric discrepancy: 0.3137

The information below is about IL_8VTW_080

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

8HL2|1|A23S|U|1348
8HL2|1|A23S|G|1349
8HL2|1|A23S|G|1350
*
8HL2|1|A23S|C|1383
8HL2|1|A23S|G|1384

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain AL4P

50S ribosomal protein L4

Chain L32E

50S ribosomal protein L32e