IL_8HL2_117

3D structure

PDB id

8HL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GGUU*AC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HL2_117 not in the Motif Atlas

Homologous match to IL_4V9F_050

Geometric discrepancy: 0.1942

The information below is about IL_4V9F_050

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_74641.3

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

36

Unit IDs

8HL2|1|A23S|G|1454
8HL2|1|A23S|G|1455
8HL2|1|A23S|U|1456
8HL2|1|A23S|U|1457
*
8HL2|1|A23S|A|1757
8HL2|1|A23S|C|1758

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain L23P

50S ribosomal protein L23

Chain L37E

50S ribosomal protein L37e

Chain L39E

50S ribosomal protein L39e