IL_8HL2_122

3D structure

PDB id

8HL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CC*GGG

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HL2_122 not in the Motif Atlas

Geometric match to IL_1HYS_003

Geometric discrepancy: 0.3786

The information below is about IL_1HYS_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_10569.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

8HL2|1|A23S|C|1625
8HL2|1|A23S|C|1626
*
8HL2|1|A23S|G|1681
8HL2|1|A23S|G|1682
8HL2|1|A23S|G|1683

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain L19E

50S ribosomal protein L19e

Chain L34E

50S ribosomal protein L34e

Chain L45A

DUF2280 domain-containing protein