IL_8HL2_130
3D structure
- PDB id
- 8HL2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.1 Å
Loop
- Sequence
- ACUCGG*CUGU
- Length
- 10 nucleotides
- Bulged bases
- 8HL2|1|A23S|G|2121
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8HL2_130 not in the Motif Atlas
- Homologous match to IL_4V9F_062
- Geometric discrepancy: 0.2597
- The information below is about IL_4V9F_062
- Detailed Annotation
- Intercalated tWH
- Broad Annotation
- Intercalated tWH
- Motif group
- IL_28217.2
- Basepair signature
- cWW-L-R-L-cWW-L-L
- Number of instances in this motif group
- 11
Unit IDs
8HL2|1|A23S|A|1826
8HL2|1|A23S|C|1827
8HL2|1|A23S|U|1828
8HL2|1|A23S|C|1829
8HL2|1|A23S|G|1830
8HL2|1|A23S|G|1831
*
8HL2|1|A23S|C|2119
8HL2|1|A23S|U|2120
8HL2|1|A23S|G|2121
8HL2|1|A23S|U|2122
Current chains
- Chain A23S
- 23s rRNA (3000-MER)
Nearby chains
- Chain AL3P
- 50S ribosomal protein L3
- Chain L14P
- 50S ribosomal protein L14
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