IL_8HL2_131

3D structure

PDB id

8HL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

8HL2|1|A23S|G|1856

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HL2_131 not in the Motif Atlas

Homologous match to IL_4V9F_063

Geometric discrepancy: 0.1498

The information below is about IL_4V9F_063

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_20700.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

11

Unit IDs

8HL2|1|A23S|C|1843
8HL2|1|A23S|G|1844
8HL2|1|A23S|U|1845
8HL2|1|A23S|A|1846
8HL2|1|A23S|A|1847
8HL2|1|A23S|C|1848
*
8HL2|1|A23S|G|1853
8HL2|1|A23S|G|1854
8HL2|1|A23S|A|1855
8HL2|1|A23S|G|1856
8HL2|1|A23S|A|1857
8HL2|1|A23S|A|1858
8HL2|1|A23S|G|1859

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain A16S

Small subunit ribosomal RNA; SSU rRNA

Chain L19E

50S ribosomal protein L19e

Chain L37A

50S ribosomal protein L37Ae