IL_8HL2_134

3D structure

PDB id

8HL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CCAC*GG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HL2_134 not in the Motif Atlas

Homologous match to IL_4V9F_066

Geometric discrepancy: 0.2057

The information below is about IL_4V9F_066

Detailed Annotation

Minor groove platform, major groove intercalation

Broad Annotation

Minor groove platform, major groove intercalation

Motif group

IL_55206.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

8HL2|1|A23S|C|1981
8HL2|1|A23S|C|1982
8HL2|1|A23S|A|1983
8HL2|1|A23S|C|1984
*
8HL2|1|A23S|G|2031
8HL2|1|A23S|G|2032

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain A16S

Small subunit ribosomal RNA; SSU rRNA

Chain AL2P

50S ribosomal protein L2