IL_8HL2_138

3D structure

PDB id

8HL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GC*GCAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HL2_138 not in the Motif Atlas

Homologous match to IL_4V9F_070

Geometric discrepancy: 0.1736

The information below is about IL_4V9F_070

Detailed Annotation

Bulged stacked bases

Broad Annotation

No text annotation

Motif group

IL_24886.3

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

13

Unit IDs

8HL2|1|A23S|G|2062
8HL2|1|A23S|C|2063
*
8HL2|1|A23S|G|2093
8HL2|1|A23S|C|2094
8HL2|1|A23S|A|2095
8HL2|1|A23S|U|2096

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain APTN

Transfer RNA; tRNA