IL_8HL2_143

3D structure

PDB id

8HL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CAG*UGGG

Length

7 nucleotides

Bulged bases

8HL2|1|A23S|G|2359

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HL2_143 not in the Motif Atlas

Homologous match to IL_4V9F_076

Geometric discrepancy: 0.1682

The information below is about IL_4V9F_076

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_87316.3

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

8HL2|1|A23S|C|2210
8HL2|1|A23S|A|2211
8HL2|1|A23S|G|2212
*
8HL2|1|A23S|U|2357
8HL2|1|A23S|G|2358
8HL2|1|A23S|G|2359
8HL2|1|A23S|G|2360

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain AL2P

50S ribosomal protein L2

Chain L15E

50S ribosomal protein L15e

Chain L44E

50S ribosomal protein L44e