IL_8HL2_145

3D structure

PDB id

8HL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

AUG*CAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: AUG,CAU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HL2_145 not in the Motif Atlas

Geometric match to IL_5J7L_050

Geometric discrepancy: 0.3181

The information below is about IL_5J7L_050

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_28037.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

8HL2|1|A23S|A|2237
8HL2|1|A23S|U|2238
8HL2|1|A23S|G|2239
*
8HL2|1|A23S|C|2308
8HL2|1|A23S|A|2309
8HL2|1|A23S|U|2310

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain AETN

Transfer RNA; tRNA

Chain AL1P

50S ribosomal protein L1