IL_8HL2_152

3D structure

PDB id

8HL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

8HL2|1|A23S|A|2379

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HL2_152 not in the Motif Atlas

Homologous match to IL_4V9F_079

Geometric discrepancy: 0.1999

The information below is about IL_4V9F_079

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

175

Unit IDs

8HL2|1|A23S|G|2367
8HL2|1|A23S|G|2368
*
8HL2|1|A23S|C|2378
8HL2|1|A23S|A|2379
8HL2|1|A23S|C|2380

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain L10E

50S ribosomal protein L10e

Chain L21E

50S ribosomal protein L21e

Chain L44E

50S ribosomal protein L44e