IL_8HL2_158

3D structure

PDB id

8HL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GUC*GGUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HL2_158 not in the Motif Atlas

Geometric match to IL_4V9F_084

Geometric discrepancy: 0.2333

The information below is about IL_4V9F_084

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_36931.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

26

Unit IDs

8HL2|1|A23S|G|2583
8HL2|1|A23S|U|2584
8HL2|1|A23S|C|2585
*
8HL2|1|A23S|G|2613
8HL2|1|A23S|G|2614
8HL2|1|A23S|U|2615
8HL2|1|A23S|U|2616
8HL2|1|A23S|U|2617

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain L10E

50S ribosomal protein L10e