IL_8HL2_162

3D structure

PDB id

8HL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CU*AGCG

Length

6 nucleotides

Bulged bases

8HL2|1|A23S|G|2696, 8HL2|1|A23S|C|2697

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HL2_162 not in the Motif Atlas

Homologous match to IL_4V9F_088

Geometric discrepancy: 0.1401

The information below is about IL_4V9F_088

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_44609.3

Basepair signature

cWW-cWW

Number of instances in this motif group

26

Unit IDs

8HL2|1|A23S|C|2636
8HL2|1|A23S|U|2637
*
8HL2|1|A23S|A|2695
8HL2|1|A23S|G|2696
8HL2|1|A23S|C|2697
8HL2|1|A23S|G|2698

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain AL3P

50S ribosomal protein L3

Chain L14P

50S ribosomal protein L14