IL_8HL2_163

3D structure

PDB id

8HL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

UG*CAAG

Length

6 nucleotides

Bulged bases

8HL2|1|A23S|A|2666

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HL2_163 not in the Motif Atlas

Homologous match to IL_4V9F_089

Geometric discrepancy: 0.213

The information below is about IL_4V9F_089

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_94991.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

17

Unit IDs

8HL2|1|A23S|U|2646
8HL2|1|A23S|G|2647
*
8HL2|1|A23S|C|2664
8HL2|1|A23S|A|2665
8HL2|1|A23S|A|2666
8HL2|1|A23S|G|2667

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain L13P

50S ribosomal protein L13