IL_8HL2_167

3D structure

PDB id

8HL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CCUCC*GCG

Length

8 nucleotides

Bulged bases

8HL2|1|A23S|C|2849

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HL2_167 not in the Motif Atlas

Homologous match to IL_4V9F_093

Geometric discrepancy: 0.2152

The information below is about IL_4V9F_093

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.13

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

23

Unit IDs

8HL2|1|A23S|C|2805
8HL2|1|A23S|C|2806
8HL2|1|A23S|U|2807
8HL2|1|A23S|C|2808
8HL2|1|A23S|C|2809
*
8HL2|1|A23S|G|2848
8HL2|1|A23S|C|2849
8HL2|1|A23S|G|2850

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain AL3P

50S ribosomal protein L3

Chain L14P

50S ribosomal protein L14

Chain L24E

50S ribosomal protein L24e